PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g075020.1 | ||||||||
Common Name | MTR_5g075020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 25263.8 Da PI: 8.1201 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.1 | 2.4e-41 | 47 | 146 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r da++s+vyeA+ r+rdPvyG++g i++lqqq+++l+ael Medtr5g075020.1 47 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAEL 140 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Medtr5g075020.1 141 HAVRTE 146 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.189 | 46 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-41 | 47 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MFGCPETVAE RLDEIAKINS EGETSSQMGR KHLYGPTSGT TLNTVTPCAA CKLLRRRCAE 60 ECPFSPYFSP HEPQKFAAVH KVFGASNVSK LLLEVPEGQR ADAANSMVYE ANLRLRDPVY 120 GCMGAISSLQ QQVQSLQAEL HAVRTELLKY KYREAASFIS SQVSMPTSAN SQPLPLPTTL 180 APPSPAPPPP QKVLASQSII LSSLSSSSTS SVYTPPKTTM SHGSISSENI PYFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 40 | 154 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 40 | 154 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.25539 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g075020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143889 | 0.0 | BT143889.1 Medicago truncatula clone JCVI-FLMt-13L16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615999.1 | 1e-171 | LOB domain-containing protein 13 isoform X1 | ||||
Swissprot | Q9AT61 | 1e-72 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | G7KFM6 | 1e-170 | G7KFM6_MEDTR; LOB domain protein | ||||
STRING | AES98957 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 9e-67 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g075020.1 |
Entrez Gene | 11433115 |
Publications ? help Back to Top | |||
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