PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g071070.2
Common NameMTR_5g071070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 623aa    MW: 68398.4 Da    PI: 7.2843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g071070.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-07193213526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Medtr5g071070.2 193 PCPEFRK-GSCSKGDSCDYAHG 213
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029714.079175IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-9176IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.4E-11194IPR020683Ankyrin repeat-containing domain
CDDcd002041.19E-4193No hitNo description
PROSITE profilePS5008811.5143065IPR002110Ankyrin repeat
PfamPF000238.0E-43064IPR002110Ankyrin repeat
SMARTSM003561.7E-4188214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4192215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263193215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4221251IPR000571Zinc finger, CCCH-type
SMARTSM0035612223246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVAAMYGSLD VSAYILGTGR VDVNRSSGSD GATALHCAVV GGSAASPKII KILLDASADA  60
SAVDANGSRP VDLIVSLANS IFNQRKRMLQ ALLEGTGGAD QTHLLFPETI DDIDEYQRQD  120
VNTPRVSKDY AVDVSLPDIK NGIYSTDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR  180
RRDPRKYHYS CVPCPEFRKG SCSKGDSCDY AHGIFECWLH PAQYKTRLCK DESLCMRRVC  240
FFAHKVEELR PLYASTGSAI PSPRSYYSTA STLEMGSISP MSLGSPSVLI PPSSTPPLTS  300
SGASSPVAAT AMWQTPSNVS IPTLQLPKSR LKTGMTARDI NSDIAMLRVE TQRRKQQLLM  360
DEMSGLSSPS NWNHSMPNSP SFPVSSTNHT TGELNRFSGV NPTNLEDFFG SLDPSMLHKF  420
HGISLDSAGS QLQSPTGIQM RPNMNQHLQQ NYSSGHSTSS VIGSPTYRFQ PSGELSASAL  480
NARAAAFSKR SQSFIERGVT NRHSELHSPA KPYAFSNWGS PDGNLDWTSH GEELNKLRKS  540
SSFAFRTTST PLTPAAARAQ ENDYEPDVSW VNTLVKDATP QESHQFSVED QKRKLQRHLN  600
NGTDSIPAWL EQLYMDQEQI VQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g071070.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351620.0AC135162.34 Medicago truncatula clone mth2-9b6, complete sequence.
GenBankCU6334720.0CU633472.5 M.truncatula DNA sequence from clone MTH2-59O10 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615688.20.0zinc finger CCCH domain-containing protein 66
TrEMBLA0A072UGA30.0A0A072UGA3_MEDTR; ARM repeat CCCH-type zinc finger protein
TrEMBLG7JZH70.0G7JZH7_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGAES986460.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-153C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]