PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g071070.1
Common NameMTR_5g071070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 705aa    MW: 77500.6 Da    PI: 6.754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g071070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07275295526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Medtr5g071070.1 275 PCPEFRK-GSCSKGDSCDYAHG 295
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.42E-825175No hitNo description
Gene3DG3DSA:1.25.40.204.4E-1541182IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.2E-1457158IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-770143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04777107IPR002110Ankyrin repeat
PROSITE profilePS5029716.86577157IPR020683Ankyrin repeat-containing domain
SMARTSM002480.085112144IPR002110Ankyrin repeat
PROSITE profilePS5008811.514112147IPR002110Ankyrin repeat
SMARTSM003561.7E-4270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4274297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035612305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MCGDSKKKTC QKDLIMGCEF VNGNKEGQYH EVSYLLEFSA ADDVIGFKNA IENEGCDVDG  60
VGLWYGRNVG SNKFGYEERT PLMVAAMYGS LDVSAYILGT GRVDVNRSSG SDGATALHCA  120
VVGGSAASPK IIKILLDASA DASAVDANGS RPVDLIVSLA NSIFNQRKRM LQALLEGTGG  180
ADQTHLLFPE TIDDIDEYQR QDVNTPRVSK DYAVDVSLPD IKNGIYSTDE FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGSCSKGDSC DYAHGIFECW  300
LHPAQYKTRL CKDESLCMRR VCFFAHKVEE LRPLYASTGS AIPSPRSYYS TASTLEMGSI  360
SPMSLGSPSV LIPPSSTPPL TSSGASSPVA ATAMWQTPSN VSIPTLQLPK SRLKTGMTAR  420
DINSDIAMLR VETQRRKQQL LMDEMSGLSS PSNWNHSMPN SPSFPVSSTN HTTGELNRFS  480
GVNPTNLEDF FGSLDPSMLH KFHGISLDSA GSQLQSPTGI QMRPNMNQHL QQNYSSGHST  540
SSVIGSPTYR FQPSGELSAS ALNARAAAFS KRSQSFIERG VTNRHSELHS PAKPYAFSNW  600
GSPDGNLDWT SHGEELNKLR KSSSFAFRTT STPLTPAAAR AQENDYEPDV SWVNTLVKDA  660
TPQESHQFSV EDQKRKLQRH LNNGTDSIPA WLEQLYMDQE QIVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g071070.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351620.0AC135162.34 Medicago truncatula clone mth2-9b6, complete sequence.
GenBankCU6334720.0CU633472.5 M.truncatula DNA sequence from clone MTH2-59O10 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615688.20.0zinc finger CCCH domain-containing protein 66
TrEMBLG7JZH70.0G7JZH7_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGAES986460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-176C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]