PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g070020.1
Common NameMTR_5g070020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 356aa    MW: 41325.4 Da    PI: 8.8688
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g070020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-18122168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Medtr5g070020.1 122 KGQWTNEEDRKLIKLVKQYGERKWAQIAEKLE-GRVGKQCRERWHNHL 168
                      799*****************************.*************97 PP
2Myb_DNA-binding52.51.1e-16174216145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+++lv  +++ G++ W+ Ia++++ gRt++ +k++w+
  Medtr5g070020.1 174 KDSWSEEEEKILVATHAKIGNR-WAEIAKKIP-GRTENAIKNHWN 216
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.326117172IPR017930Myb domain
SMARTSM007171.3E-16121170IPR001005SANT/Myb domain
SuperFamilySSF466895.29E-29121215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-28123175IPR009057Homeodomain-like
PfamPF139211.1E-19125183No hitNo description
CDDcd001673.79E-15125168No hitNo description
SMARTSM007177.3E-15173221IPR001005SANT/Myb domain
PROSITE profilePS5129419.48173223IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-20176221IPR009057Homeodomain-like
CDDcd001679.40E-11176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVRGGNHGVN GVKIFGNENI NVNDPLMDRF LLGQMIHYPN HQQNNASMFP YSYGSNHEFM  60
WPNYTQQSSF VVDGVLANEE ALKWTNFNQT PTLCLKDLQG YGENTNIVGR KTKKETSEIL  120
IKGQWTNEED RKLIKLVKQY GERKWAQIAE KLEGRVGKQC RERWHNHLRP DIKKDSWSEE  180
EEKILVATHA KIGNRWAEIA KKIPGRTENA IKNHWNATKR RQNSRRKNKK NETNFKGSKP  240
KSYILENYIK TNTFITTKIT NIPSSSHATL SLNLEENQSN TLFNELPYDS FSNELHFIQQ  300
ILMDDNNNQN VVDDVNESEL VHSIQYPNYN MHLDTPTSMN NFLPHDLYLS QLLNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-461192221104C-Myb DNA-Binding Domain
1msf_C3e-461192221104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}.
UniprotTISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g070020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337660.0CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735100.0CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640698.10.0transcription factor MYB119
SwissprotQ9FIM45e-67MY119_ARATH; Transcription factor MYB119
TrEMBLG7K6C70.0G7K6C7_MEDTR; Myb transcription factor
STRINGAES985650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-59myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]