PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g069710.1
Common NameMTR_5g069710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 308aa    MW: 35387.4 Da    PI: 7.2319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g069710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.3e-102872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE +l+ +a + + ++   +W+++a++++ g+t  ++   + 
  Medtr5g069710.1 28 NWTPEENKLFENALAVHDKDtpdRWHKVAEMIP-GKTVGDVMRQYK 72
                     7********************************.***999988775 PP
2Myb_DNA-binding44.73.2e-14133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Medtr5g069710.1 133 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 177
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3822477IPR017884SANT domain
SMARTSM007176.7E-102577IPR001005SANT/Myb domain
CDDcd001672.80E-82874No hitNo description
PfamPF002492.6E-82872IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-42871IPR009057Homeodomain-like
SuperFamilySSF466891.29E-122882IPR009057Homeodomain-like
PROSITE profilePS5129420.486126182IPR017930Myb domain
SuperFamilySSF466898.22E-17127181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17129181IPR006447Myb domain, plants
SMARTSM007175.3E-13130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-12130177IPR009057Homeodomain-like
CDDcd001671.60E-10133178No hitNo description
PfamPF002491.1E-12133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKWEMEVLPP ASYTQNSNWC MEDNMATNWT PEENKLFENA LAVHDKDTPD RWHKVAEMIP  60
GKTVGDVMRQ YKELEDDVCN IEAGLIPVPG YNTPTLPFTL DWVNSSGYDE FRGSGKRSSL  120
VRAPEQERKK GVPWTEEEHK LFLLGLKKYG KGDWRNISRN FVITRTPTQV ASHAQKYFIR  180
QLSGGKDKRR ASIHDITTVN LSEKIGTCSS EDTSNRSTSP QNSILLSHQQ QQQQTSTATN  240
FRWRNNQQNA MAFNPTHEQV FMDPHGFNSY EVKMQDQNLH KGLVHESSYP HNMVFQMQHS  300
SQHYSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1529931175RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.174660.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g069710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337660.0CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735100.0CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615578.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-113DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLG7K6980.0G7K698_MEDTR; MYB transcription factor MYB51
STRINGAES985360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-90MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]