PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g069480.3
Common NameMTR_5g069480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family DBB
Protein Properties Length: 296aa    MW: 32423.2 Da    PI: 4.947
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g069480.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.64e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +++++   +C+++   lC +C  + H+       H++
  Medtr5g069480.3  4 LCDFCGDQRSLVYCRSDAASLCLSCDRNVHSAnelskrHSR 44
                     7*****************************65666666765 PP
2zf-B_box22.13.2e-074690442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                      +C++++ +++   C + ++ lC++C  + H g       H+++++
  Medtr5g069480.3 46 LVCERCNLQPAYVRCVEEKVSLCQNCDWSAH-GtnpssstHKRQSI 90
                     68*****************************.55888899988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.556147IPR000315B-box-type zinc finger
CDDcd000211.29E-6447No hitNo description
PROSITE profilePS501199.1584390IPR000315B-box-type zinc finger
CDDcd000214.01E-44790No hitNo description
SMARTSM003360.0334890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGSLCDFCGD QRSLVYCRSD AASLCLSCDR NVHSANELSK RHSRTLVCER CNLQPAYVRC  60
VEEKVSLCQN CDWSAHGTNP SSSTHKRQSI NCFSGCPSAS ELSSIWPFFS DIPSTGEACE  120
HKLGLMSINE NSDNSARVPP ESKNVSGSAQ VADLPSKNKS GVDTSSIPES SAKPRILDQA  180
PGSSNEFMPK LLCPSRKAPA LCEDDKLLDD FNIDEMDFEL ENYSELFDFA LNHSEEFFEN  240
GGINSLFERK DMSASAGDSN CQGAFAAEVL KSHRPLLAIT LAFLLSKIYR YMSHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g069480.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621370.0CR962137.2 Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615555.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_024640281.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA96e-77COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A072UG870.0A0A072UG87_MEDTR; Zinc finger constans-like protein
STRINGAES985130.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-79B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]