PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g069480.2
Common NameMTR_5g069480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 411aa    MW: 45027 Da    PI: 5.7643
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g069480.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.6e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +++++   +C+++   lC +C  + H+       H++
  Medtr5g069480.2  4 LCDFCGDQRSLVYCRSDAASLCLSCDRNVHSAnelskrHSR 44
                     7*****************************65666666765 PP
2zf-B_box21.45.2e-074690442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                      +C++++ +++   C + ++ lC++C  + H g       H+++++
  Medtr5g069480.2 46 LVCERCNLQPAYVRCVEEKVSLCQNCDWSAH-GtnpssstHKRQSI 90
                     68*****************************.55888899988765 PP
3CCT64.43.3e-22353396144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a++RYkeK+k+RkF+Kk+rY+sRKa+A+ R+RvKGrFvk+ 
  Medtr5g069480.2 353 RSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAG 396
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.556147IPR000315B-box-type zinc finger
CDDcd000215.10E-7447No hitNo description
PROSITE profilePS501199.1584390IPR000315B-box-type zinc finger
CDDcd000211.91E-44790No hitNo description
SMARTSM003360.0334890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.477353395IPR010402CCT domain
PfamPF062034.5E-17353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGSLCDFCGD QRSLVYCRSD AASLCLSCDR NVHSANELSK RHSRTLVCER CNLQPAYVRC  60
VEEKVSLCQN CDWSAHGTNP SSSTHKRQSI NCFSGCPSAS ELSSIWPFFS DIPSTGEACE  120
HKLGLMSINE NSDNSARVPP ESKNVSGSAQ VADLPSKNKS GVDTSSIPES SAKPRILDQA  180
PGSSNEFMPK LLCPSRKAPA LCEDDKLLDD FNIDEMDFEL ENYSELFDFA LNHSEEFFEN  240
GGINSLFERK DMSASAGDSN CQGAFAAEGS SARFVSAIQP ECSNAASADS ILSTKTEPVI  300
YFTERQSNLS FSGVNKDASA GDYQECGTSS MLLTGEPPWC PPCPENSIQS ANRSNAVMRY  360
KEKKKNRKFD KKVRYASRKA RADVRKRVKG RFVKAGETYD YDPLSQTRSC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g069480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621370.0CR962137.2 Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615555.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_024640281.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-136COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLG7KE220.0G7KE22_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAES985130.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-115CONSTANS-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]