PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g069480.1 | ||||||||
Common Name | MTR_5g069480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | CO-like | ||||||||
Protein Properties | Length: 411aa MW: 45027 Da PI: 5.7643 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.9 | 6.6e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ lC +C + H+ H++ Medtr5g069480.1 4 LCDFCGDQRSLVYCRSDAASLCLSCDRNVHSAnelskrHSR 44 7*****************************65666666765 PP | |||||||
2 | zf-B_box | 21.4 | 5.2e-07 | 46 | 90 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 +C++++ +++ C + ++ lC++C + H g H+++++ Medtr5g069480.1 46 LVCERCNLQPAYVRCVEEKVSLCQNCDWSAH-GtnpssstHKRQSI 90 68*****************************.55888899988765 PP | |||||||
3 | CCT | 64.4 | 3.3e-22 | 353 | 396 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k+RkF+Kk+rY+sRKa+A+ R+RvKGrFvk+ Medtr5g069480.1 353 RSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAG 396 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.556 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.10E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.158 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.91E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.033 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.477 | 353 | 395 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.5E-17 | 353 | 395 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGSLCDFCGD QRSLVYCRSD AASLCLSCDR NVHSANELSK RHSRTLVCER CNLQPAYVRC 60 VEEKVSLCQN CDWSAHGTNP SSSTHKRQSI NCFSGCPSAS ELSSIWPFFS DIPSTGEACE 120 HKLGLMSINE NSDNSARVPP ESKNVSGSAQ VADLPSKNKS GVDTSSIPES SAKPRILDQA 180 PGSSNEFMPK LLCPSRKAPA LCEDDKLLDD FNIDEMDFEL ENYSELFDFA LNHSEEFFEN 240 GGINSLFERK DMSASAGDSN CQGAFAAEGS SARFVSAIQP ECSNAASADS ILSTKTEPVI 300 YFTERQSNLS FSGVNKDASA GDYQECGTSS MLLTGEPPWC PPCPENSIQS ANRSNAVMRY 360 KEKKKNRKFD KKVRYASRKA RADVRKRVKG RFVKAGETYD YDPLSQTRSC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g069480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR962137 | 0.0 | CR962137.2 Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615555.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_024640281.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-136 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | G7KE22 | 0.0 | G7KE22_MEDTR; Putative transcription factor C2C2-CO-like family | ||||
STRING | AES98513 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-115 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g069480.1 |
Entrez Gene | 11415514 |
Publications ? help Back to Top | |||
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