PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g065440.1

Common Name

MTR_5g065440

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

ZF-HD

Protein Properties

Length: 269aa MW: 29244.2 Da PI: 6.9446

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g065440.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95	6.1e-30	55	111	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e Medtr5g065440.1 55 SVRYRECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 111 69************************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-20	54	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.1E-28	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-26	57	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.961	58	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.83E-20	192	266	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-29	194	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-21	205	262	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEFDEQEEQE EEMEIPEIQT PVPTSYDSLS NSASRSKLTV GVDGRKGNGN GGFASVRYRE 60 CQKNHAVSFG GHAVDGCCEF IAAGEEGTLE AVICAACNCH RNFHRKEIDG ETVSSCNRPQ 120 PPPPPPQYHH HNNQFSPYYH RAPPSTAGYL HHHHLATPVA HHRPLALPAA ASGGGMSRED 180 DDMSNPSSSG GGGGGGGGSG GSGSRKRFRT KFTQEQKEKL LAFAEEHGWR IQKQDEAAIE 240 QFCAENCIKR NVLKVWMHNN KNTLGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	204	263	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	198	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g065440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU928860	0.0	CU928860.2 Medicago truncatula chromosome 5 clone mth4-58a13, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003615230.1	0.0	zinc-finger homeodomain protein 2
Swissprot	A2Z259	8e-67	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-66	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	G7KBF3	0.0	G7KBF3_MEDTR; Homeobox domain, ZF-HD class protein
STRING	AES98188	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-59	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Medtr5g065440.1
Entrez Gene	11427388

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]