PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g064950.2 | ||||||||
Common Name | MTR_5g064950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 35346.8 Da PI: 9.5094 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 98 | 149 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++l+P++ + ++ + a+i+ A++++k+Lq Medtr5g064950.2 98 QRMTHIAVERNRRKQMNEYLDILKSLMPPS---YVQRGDQASIVGGAINFLKELQ 149 79****************************...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.12E-14 | 96 | 153 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-13 | 96 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.561 | 97 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 97 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-12 | 98 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 103 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MALEAVVFPQ DPFTYGCLTK DEEDLFGIIS NNLDHNILSN WDSSSPSNIK EQWNSHSSPE 60 TSTLPPSTFE ATTTITAPRR RKRRHTVNAK NKEEIESQRM THIAVERNRR KQMNEYLDIL 120 KSLMPPSYVQ RGDQASIVGG AINFLKELQQ HLQFMKGQKK INKEAHENSF ISCSCSSQPL 180 TEFFMFPQYS MDARQNITCY PTKHNQSRAM GDIEVTLVDS HANIKIMLKK RQGQVMKMVA 240 GIQNLGFNIL HLNVSSMDDN VLVSVSAKVN WFTFCLMLIY VLFTWYITLL FFGINNISLK 300 LILKIKKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 81 | PRRRK |
2 | 98 | 109 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g064950.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU928858 | 0.0 | CU928858.2 Medicago truncatula chromosome 5 clone mth4-5i12, COMPLETE SEQUENCE. | |||
GenBank | FP016159 | 0.0 | FP016159.1 Medicago truncatula chromosome 5 clone mth2-188h20, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615193.2 | 0.0 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 9e-71 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A072UF79 | 0.0 | A0A072UF79_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein | ||||
STRING | AES98151 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g064950.2 |
Entrez Gene | 11428883 |
Publications ? help Back to Top | |||
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