PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g062790.1
Common NameMTR_5g062790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 305aa    MW: 35294.1 Da    PI: 4.429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g062790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+ +v+ +G+++W+ +++  g+ R++k+c++rw+++l
  Medtr5g062790.1 11 KGTWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHL 58
                     799*******************************************97 PP
2Myb_DNA-binding35.91.8e-1164107145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g++++eE+ +     k++G   W++ a++++ gR+++++k++w+
  Medtr5g062790.1  64 KGPFSEEEETKVFVFYKKYGEFKWSKLAEELP-GRSDNDIKNFWN 107
                      79******************99**********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.361662IPR017930Myb domain
SuperFamilySSF466891.62E-258106IPR009057Homeodomain-like
SMARTSM007172.2E-141060IPR001005SANT/Myb domain
PfamPF002493.9E-161158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-231265IPR009057Homeodomain-like
CDDcd001671.89E-121358No hitNo description
SMARTSM007172.9E-1263112IPR001005SANT/Myb domain
PROSITE profilePS5129415.2363114IPR017930Myb domain
PfamPF002492.2E-1064107IPR001005SANT/Myb domain
CDDcd001673.64E-1066107No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1866112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSSSSVDTK KGTWSKEEDE ILKAYVENHG TRNWNEVSKN AGLIRCGKSC RLRWYNHLQP  60
DVKKGPFSEE EETKVFVFYK KYGEFKWSKL AEELPGRSDN DIKNFWNARK RKLERRGLSP  120
FPDNMELDDE LNSSQQIEDS QEDEFHIPQL KFRKYPSIFD EINEKLLDVP NMFYNNIVGS  180
TSTLIDRGSI IGTSYIPMAP PPPCSYLPPP METQYHGDFM DPDFWLHNSS LDNDDARRVY  240
LSETNFVDEK GKKPISLEDD VEANLLDDFM DPFLCIDFSN LEDDVEAGGR LFDNDDNRNL  300
HDTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2381144109B-MYB
1h8a_C8e-231111227126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g062790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9141320.0CU914132.2 Medicago truncatula chromosome 5 clone mth2-49m20, COMPLETE SEQUENCE.
GenBankFP0161550.0FP016155.2 Medicago truncatula chromosome 5 clone mte1-16i20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615031.10.0transcription factor MYB101
TrEMBLG7KA870.0G7KA87_MEDTR; Myb DNA-binding domain protein
STRINGAES979890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15637211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.12e-44myb domain protein 81
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]