PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g062700.1 | ||||||||
Common Name | MTR_5g062700, WXP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 372aa MW: 41192.4 Da PI: 5.4357 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 172 | 221 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Medtr5g062700.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYRLRG 221 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.25E-34 | 171 | 230 | No hit | No description |
SMART | SM00380 | 2.1E-37 | 172 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 172 | 229 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-23 | 172 | 229 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 172 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 173 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-14 | 173 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDFFNNSQDP FNGELMEVLE PFMKSSSISP SSPPSLNSHL PSTSSSSSSP FYSSTPPFFQ 60 PSFSPQSSSS SSSFPPQPNF YTENGYCSSM MNYQFPSLGN SSTSQNNFIG FEQPQQPNSV 120 IGLNTLTPSQ INQIQAQIQF QQTQSNNSSL NFLGPKPIPM KQPGVPPKPT KLYRGVRQRH 180 WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDRAAYRLR GDFARLNFPN MKDQQQGGMF 240 GEFKVLHSSI DAKLDAICES LGNNNSSDNV KNKKQGKGSK KSLKKEVEAQ PQPQPLVVVE 300 NNNDDNNNTN TNKVVVECGS SLSSHSEGGS DDSSPLSDLT FGEFAEPQWE NGFEQFNLQK 360 FPSYEIDWAS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 171 | 229 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.5789 | 0.0 | flower| glandular trichome| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g062700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP016155 | 0.0 | FP016155.2 Medicago truncatula chromosome 5 clone mte1-16i20, COMPLETE SEQUENCE. | |||
GenBank | FP102213 | 0.0 | FP102213.2 Medicago truncatula chromosome 5 clone mtrs-161b8, COMPLETE SEQUENCE. | |||
GenBank | JN595891 | 0.0 | JN595891.1 Medicago truncatula putative AP2/EREBP transcription factor (WXP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615022.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 1e-77 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | G7KA78 | 0.0 | G7KA78_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES97980 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-43 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g062700.1 |
Entrez Gene | 11437084 |