PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g061740.1
Common NameMTR_5g061740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 332aa    MW: 38162.6 Da    PI: 5.8918
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g061740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.28.6e-0819422750
                     HHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF 27 LSvLCdaevaviifsstgklyeys 50
                     LS+LCd+++a+i+fs++ +l  +s
  Medtr5g061740.1 19 LSILCDIDIALIMFSPSKRLSHFS 42
                     9*******************9997 PP
2K-box23.32.6e-091071741178
            K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                      +++ e+lqqe+ +L++++++ ++++R +  + L+  s+ eL+  e+++ + ++++ ++K+ ll +q++
  Medtr5g061740.1 107 NSEIEELQQEVCRLQQQLQMAEEQIRIYEPDPLKMTSIAELETSEKNIVETMSRVMQRKEVLLNNQLS 174
                      67899************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.227145IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-11144IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-14264IPR002100Transcription factor, MADS-box
PfamPF003193.0E-61741IPR002100Transcription factor, MADS-box
PfamPF014861.7E-5109175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQLS ILCDIDIALI MFSPSKRLSH FSGKRRIEDV LSRYINLPDQ  60
ERDNAVSFPE PPYRRGIQNK EYFLRILQQL RSENDVSLHM SNPGDINSEI EELQQEVCRL  120
QQQLQMAEEQ IRIYEPDPLK MTSIAELETS EKNIVETMSR VMQRKEVLLN NQLSSYDPSS  180
IQGMPTTFEN VGWLQDSGQN HSHNIFDASA PMDPLRDLSS AVYGSFSQGT SSNVVDQRNI  240
GECHVANPND GNMQTWPQGY TLYPQQHHQH IQHDIVGTDH QHHHHHNIQD MMPHGQMNMP  300
ITASQVEPPK NESLTDQYDQ CKQPNHQLHA Q*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g061740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639079.10.0LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-97AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLG7KA120.0G7KA12_MEDTR; MADS-box transcription factor
STRINGXP_004490359.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-87AGAMOUS-like 104
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]