PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g058470.1 | ||||||||
Common Name | MTR_5g058470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 33079.2 Da PI: 8.9308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Medtr5g058470.1 94 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 144 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-17 | 94 | 153 | No hit | No description |
PROSITE profile | PS51032 | 21.931 | 95 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-11 | 95 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 95 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-33 | 95 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-18 | 95 | 154 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.1E-9 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-9 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900030 | Biological Process | regulation of pectin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MKVSLYKYIF FTSPNSVPIA SFTLHFENIT NKTKSHTHIK KRETPSTHTL KKTFLHPFIM 60 VKTEINKINK EKPKPKPMQQ HVLSTKAASN DKKKKYKGVR MRSWGSWVSE IRAPNQKTRI 120 WLGSYSTAEA AARAYDAALL CLKGSSATNL NFPLETSSHF IPQENISMSP KSIQRVAAAA 180 AAASSSSSSS NNDVTNTIST PPTSSSSLVS SPSMSSSPSD QIDDDVSLFS SFGACDDHYQ 240 ANDQSMAMMD SWYGFDGLLQ SPKHVDQMLS GSLFDIDSTQ VLLDDWYEEG DISLWSFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 92 | 158 | 2 | 68 | ATERF1 |
3gcc_A | 4e-15 | 92 | 158 | 2 | 68 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17392 | 1e-62 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g058470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146757 | 5e-60 | BT146757.1 Medicago truncatula clone JCVI-FLMt-5M3 unknown mRNA. | |||
GenBank | CR538723 | 5e-60 | CR538723.1 M.truncatula DNA sequence from clone MTH2-27D24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614739.2 | 0.0 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 2e-43 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | G7K8S8 | 0.0 | G7K8S8_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES97697 | 1e-172 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g058470.1 |
Entrez Gene | 11436027 |
Publications ? help Back to Top | |||
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