PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g057810.1
Common NameMTR_5g057647, MTR_5g057810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 300aa    MW: 33947.1 Da    PI: 5.7346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g057810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.2e-1386133152
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
                      ++ykGVr +k +g+++AeIr  +     + +r +lg+f+tae A  a+   r +
  Medtr5g057810.1  86 CKYKGVRMRK-WGKFAAEIRNpF-----KgTREWLGTFDTAEAASHAYQTKRHE 133
                      79******99.**********55.....45**************9999887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.39E-2086127No hitNo description
PfamPF008476.8E-886127IPR001471AP2/ERF domain
SMARTSM003804.8E-1387141IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1487133IPR016177DNA-binding domain
PROSITE profilePS5103217.63587145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1987131IPR001471AP2/ERF domain
PRINTSPR003674.5E-88899IPR001471AP2/ERF domain
PRINTSPR003674.5E-8110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGPPSHKSHV SKRTRRLRII YDDPDATDSS SDEENHYVQE QGKRKRCVLE LAIPNSSINA  60
VCPVETVTDK NKSRTKPKPI VRQPSCKYKG VRMRKWGKFA AEIRNPFKGT REWLGTFDTA  120
EAASHAYQTK RHEFQVIANR RLAYEKSRKS FKNVVSKKSK IGMLHKSSSS SSPGLVNRVP  180
KLVERAKISC NEPIVESLSL LVQKPNVVED SDMTLLESDW LIFDGLGQGL DDLGCLDDLQ  240
LFDFDMNEAI DFSNFNFYEF ESNNFLDDVG ADYVDVDAES VDEDEIASWI EEPYNTPSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g057810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0172020.0FP017202.3 Medicago truncatula chromosome 5 clone mth2-106m15, COMPLETE SEQUENCE.
GenBankFP0172030.0FP017203.3 Medicago truncatula chromosome 5 clone mth4-9a24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614696.10.0ethylene-responsive transcription factor ERF118
RefseqXP_013453972.10.0ethylene-responsive transcription factor ERF118
TrEMBLG7JX980.0G7JX98_MEDTR; AP2 domain transcription factor-like protein
STRINGAES976540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-24ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]