PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g054300.1
Common NameMTR_5g054300
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 362aa    MW: 40567.3 Da    PI: 6.99
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g054300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.5e-31198253156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W++eLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+
  Medtr5g054300.1 198 KQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLH 253
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.283195255IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-28196256IPR009057Homeodomain-like
SuperFamilySSF466894.66E-18196256IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-27198253IPR006447Myb domain, plants
PfamPF002498.1E-7200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVSMQFHHKM HSHKMEFRDY ILALEEEKKK IQVFPRDLPL SLELVTQAIE TCKQQLFGTQ  60
SECSEQTSTD EGLVFEEFIP IKKRALSPDC DENDEEDDDD EEQHSSHKMK SDWLRSVQLW  120
NPNPSSAKED VPRKTNVVEV KRNGGAFQPF HKEEIAAEKD NALESDKAPT SSPQVPATSS  180
TEPVPESGSK KDDKGQRKQR RCWSQELHKR FLHALQQLGG SNSATPKQIR ELMKVDGLTN  240
DEVKSHLQKF RLHTRRSPII HNNSNSHTAP MFLVGNIYVQ PQEYAAVATK TTVSGELTTV  300
TTPTGIYAPV ATHPSSTTTV IKPKSKKFEL SENSHSVERV VAHSNSPASS CSTHTPTTSR  360
C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.117760.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g054300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4695580.0CU469558.1 Medicago truncatula chromosome 5 clone mte1-71d2, COMPLETE SEQUENCE.
GenBankCU9141240.0CU914124.2 Medicago truncatula chromosome 5 clone mte1-78p15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614475.20.0transcription factor HHO3
SwissprotQ9FPE82e-82HHO3_ARATH; Transcription factor HHO3
TrEMBLG7JYB40.0G7JYB4_MEDTR; Myb-like transcription factor family protein
STRINGAES974330.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-74G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]