PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g053430.1 | ||||||||
Common Name | MTR_5g053430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 443aa MW: 49671.1 Da PI: 4.6005 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.9 | 1.1e-32 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 lp+G++F+P+d+e++++ L+k g++ ++++ + ev +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + + Medtr5g053430.1 58 LPKGVKFDPSDQEVIWHLLAKCGVGNSkphpfVDEFIITLEVndGICYTHPQNLP-GVKQDGNASHFFHRAIKAYNTGTRKRRKIHdqdfgDVR 150 799************998888765555577664444454444346**********.778889999******************85555555889 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgra..pkgektdWvmheyrl 128 W++tg++k+v+ +g ++g+kk++v+y +a k+ekt+Wvmh+y+l Medtr5g053430.1 151 WHKTGRTKPVIL-NGVQKGCKKIMVLYMSSAggGKAEKTNWVMHQYHL 197 ************.999***********6554115667*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-39 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.849 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MAGPSWLVDK SRIATKIKSA SGACDPENVT WKSNPTKACP NCQHTIDNSD VVKEWPGLPK 60 GVKFDPSDQE VIWHLLAKCG VGNSKPHPFV DEFIITLEVN DGICYTHPQN LPGVKQDGNA 120 SHFFHRAIKA YNTGTRKRRK IHDQDFGDVR WHKTGRTKPV ILNGVQKGCK KIMVLYMSSA 180 GGGKAEKTNW VMHQYHLGTE EDEKDGEFVI SKVFYQQQQV KLGDKDEQDI PEAIEATIAK 240 VDPVTPKSVT PEPPYTERLY SDVDLGQDTP AIPQMNCLDE IQPYCEEQAK DDLSMVETER 300 NEGKDNNENN ADDGQKWCEG TDNNENNADE GQKWWDSESQ NLLDSQQLVD ALSLCDDLLR 360 SQSPTRDGKD EEQKNQPSLS IYAQLGPEHL KKDIEDCQNL VLEPSNVESN VENDTPSEFR 420 LSQLEFGSQD SFIAFGYNKV VK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g053430.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139372 | 0.0 | BT139372.1 Medicago truncatula clone JCVI-FLMt-21L19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614421.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-178 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | G7JX38 | 0.0 | G7JX38_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES97378 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-180 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g053430.1 |
Entrez Gene | 11425980 |