PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g048860.4
Common NameMTR_5g048860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 559aa    MW: 59905.2 Da    PI: 4.8699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g048860.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09374422355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Medtr5g048860.4 374 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 422
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-17369440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-11369426No hitNo description
PROSITE profilePS5088815.459371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16372438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6374422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10377427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSDKEKFEVD GNEEDPMSYS SGMPPDWRFG ANSSVGLVSI GNSMSMNRGD LIGSSSCSSA  60
SMVDSFSPNF WDHSANSQNL GFCDINGSSS NTIGIRKDGF GFGRGGHDHG TLEIGWNQAN  120
AMMKGDGFLP NGQGVFPQSL SQFPTDSGFI ERAARFSCFG GGNFSDVVNA YGVPQSMAMY  180
AGSIHGTRDA LAGVGLRVAN GGPTQESDDP NVVEAATKGV VSPSVEQLAT RESPLKNDKS  240
EGWVGSQDEG KQALVQNVND SDGGESGDDD GGRGGQDGSP MLEGTTSGEP SMKGLNSKKR  300
KRSGQDADND KPNGTQELQN EGAKDNPENQ QKCDQQPTST IKASGKNAKQ GSQNSDPPKE  360
EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQELVPG CSKVTGKAVM LDEIINYVQS  420
LQRQVEFLSM KLATVNPRLD FNIESLLAKD VLHQRPGPSS TLGFPLEMSM NFPPLHPSQP  480
GMIQSVIPNM ANPSDILRRT IHTQLTPLSG GFKEPNQMPD VWADELHNVV QMSFATTAPM  540
SSQDVDGTTA ANQMKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.147300.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g048860.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639981.10.0transcription factor bHLH49
RefseqXP_024639982.10.0transcription factor bHLH49
RefseqXP_024639983.10.0transcription factor bHLH49
RefseqXP_024639984.10.0transcription factor bHLH49
RefseqXP_024639985.10.0transcription factor bHLH49
RefseqXP_024639986.10.0transcription factor bHLH49
RefseqXP_024639987.10.0transcription factor bHLH49
RefseqXP_024639988.10.0transcription factor bHLH49
TrEMBLA0A072UE550.0A0A072UE55_MEDTR; BHLH transcription factor
STRINGXP_004490333.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-102bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]