PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g046670.1 | ||||||||
Common Name | MTR_5g046670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 501aa MW: 56341.7 Da PI: 7.5719 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.6 | 1.3e-41 | 243 | 319 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrfh + efD++krsCrrrLa+hnerrrk+q Medtr5g046670.1 243 VCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQ 319 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-33 | 241 | 305 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.59 | 241 | 318 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.28E-39 | 242 | 323 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-31 | 244 | 317 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MAALQQVKRK VEKGKVYRGG RSSGVVRTLG DAAAPADQYV APSQGTRFLH YFNISVTSIQ 60 FVVMESWSYI PEERSYLFSD EMDFSLDAFM RSRKPLVEWE NKSSCNFERD GFNSDREVVK 120 SMEFVDLGFP MESSRTVRGS VQTSSCELDS NNSSKRENSS VHVIAFDSSF AEEDSEAKHL 180 SSRVESKNHD SSLIDLKLGR LVDCRGGGSD RDGKTFTSES MPIHQNVLAK RSRTSSLPAL 240 APVCQVYGCN MDLSSSKDYH KRHKVCDVHS KTAKVIVNGV EQRFCQQCSR FHLVAEFDDG 300 KRSCRRRLAG HNERRRKPQF DYMTSKQHKI LQSYQGTNNF SFQDIFQSGI LFPEKHDQIS 360 QSGHIKLEED PICSPQLEAP ATHGHELSSH ALSLLSAQSQ NPLHQAAGNP SATSSTFFRD 420 IRTQDRGDQV SETPLMTSSM NKHERNESFP CGINSKENIK SEHGGTVDLF QLSSNLQRVE 480 KQRNSVLVKW ENEDCCFSNV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-29 | 243 | 317 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g046670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR932968 | 0.0 | CR932968.2 Medicago truncatula chromosome 5 clone mth2-8e17, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640056.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | G7JX04 | 0.0 | G7JX04_MEDTR; Squamosa promoter-binding-like protein | ||||
STRING | AES97184 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-59 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g046670.1 |
Entrez Gene | 11426662 |
Publications ? help Back to Top | |||
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