PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g045560.1 | ||||||||
Common Name | MTR_5g045560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26924.6 Da PI: 8.1129 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.9 | 1.1e-22 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a va+iifs+ k++ + Medtr5g045560.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPGEKVFSF 64 5689***************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.796 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-33 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.04E-36 | 9 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-28 | 9 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-19 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-19 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-19 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSGKKTLGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAYV ALIIFSPGEK 60 VFSFGHPNVE TVIDRYLSLV PTQNDDITQF IEAYRNASVR ELNDILTHMK EALDIDKNRA 120 NELSQLRKNN EAHFWWTCPF DRMNMVQLGS FKKALEDLQK LVAHYANKVE IQGTSTQPVP 180 FLVGNGSSSN MQFEHQPNLQ QDSIFLAQFL QNPMFQPHLF DFNNMGGEGG HGPHGFF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g045560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT573052 | 0.0 | CT573052.2 Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614528.1 | 1e-129 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 3e-53 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | G7JZ38 | 1e-178 | G7JZ38_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES97117 | 1e-179 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-56 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g045560.1 |
Entrez Gene | 11426657 |