PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g042030.1
Common NameMTR_5g042030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 290aa    MW: 32748 Da    PI: 8.6059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g042030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+ +v+q+G ++W++ +++  ++R++k+c++rw +y+
  Medtr5g042030.1  9 KGPWTPKEDKKLIAYVTQHGHRNWHSLPSRAVLRRCGKSCRLRWINYM 56
                     79********************************************97 PP
2Myb_DNA-binding52.51.1e-1662104145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ eEd  +++++++lG++ W+tIa+ ++ +Rt++++k++w+
  Medtr5g042030.1  62 RGNFSSEEDHNIIQLHALLGNK-WSTIAALLP-RRTDNEIKNHWN 104
                      89********************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.04156IPR017930Myb domain
SuperFamilySSF466893.09E-296103IPR009057Homeodomain-like
SMARTSM007172.8E-12858IPR001005SANT/Myb domain
PfamPF002498.8E-15955IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-231063IPR009057Homeodomain-like
CDDcd001671.79E-101156No hitNo description
PROSITE profilePS5129425.11257111IPR017930Myb domain
SMARTSM007179.2E-1361109IPR001005SANT/Myb domain
PfamPF002491.1E-1462104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2364112IPR009057Homeodomain-like
CDDcd001677.55E-964104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSRALGLKKG PWTPKEDKKL IAYVTQHGHR NWHSLPSRAV LRRCGKSCRL RWINYMIPDI  60
KRGNFSSEED HNIIQLHALL GNKWSTIAAL LPRRTDNEIK NHWNINIKKR LIRMGIDPTT  120
HKPKSNNNND NDNTAIKHVS QWEHVRLEAE ARSTMLGKTQ TKLLLSSSSS SMLSLTKHNN  180
AMYNICAIML ANNDDSFSST STLSFSNELP CLTNELKFGE GLGSYESVSN NNIMETIAQD  240
HVYVSKLLQG DDYLMVALDA FGDSFNGDTF MDFNGNGMYN FDASLAFFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2971115108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g042030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5735050.0CT573505.1 Medicago truncatula chromosome 5 clone mth2-15a1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613875.30.0transcription factor MYB16
TrEMBLG7JWG10.0G7JWG1_MEDTR; Myb transcription factor
STRINGAES968330.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-69myb domain protein 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]