PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g041570.1
Common NameMTR_5g041570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 439aa    MW: 50303.3 Da    PI: 6.1672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g041570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16134179147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Medtr5g041570.1 134 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 179
                      899*****************************.***********996 PP
2Myb_DNA-binding56.94.7e-18186229146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Medtr5g041570.1 186 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 229
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.938129180IPR017930Myb domain
SMARTSM007172.9E-14133182IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-28133227IPR009057Homeodomain-like
PfamPF002499.2E-16134179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-26135187IPR009057Homeodomain-like
CDDcd001671.35E-12137178No hitNo description
PROSITE profilePS5129427.372181235IPR017930Myb domain
SMARTSM007178.9E-15185233IPR001005SANT/Myb domain
PfamPF002491.2E-14186228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-21188234IPR009057Homeodomain-like
CDDcd001671.99E-11188228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MISSQENQSL SSSSSFSFPN SSMHMVYADL GSLSINTNYG VVSSLDKESK NSYAFKSFVM  60
ENGSVFPFMS ECLSKRYEEH NMDDDMEGKG SYWSEEGENS ERINHNNTNF NDELENPNGS  120
GKEEDNGQSS KCARGHWRPA EDSKLKELVA LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL  180
DPRINRRAFT EEEEERLMQA HRIYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSN  240
AYRRRRLSQN VYSRMEQNPS FGRRDTATME TESSPPYFLN GAPLGNSMSI FQYATSFQHC  300
AHGGRVEYGL NVLPHMSGER EAMQGPLHVG LYAQQAPFDY FSVGRSNDMV EEPFNQIRYW  360
DGTKDEYQQL NGFYHHYPQQ YLMTKQNQNN HNFHIFSNSS AASATHHNAE NSEKVLVDDT  420
PDAVETPQFF DFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331342347107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246YRRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g041570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0258400.0CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613837.10.0transcription factor MYB105
SwissprotQ9SEZ41e-78MY105_ARATH; Transcription factor MYB105
TrEMBLG7KGM90.0G7KGM9_MEDTR; Myb transcription factor
STRINGAES967950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-80myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]