PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g041530.1 | ||||||||
Common Name | MTR_5g041530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 382aa MW: 42430.1 Da PI: 7.72 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.6 | 1.8e-35 | 137 | 194 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + +++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GGa rn+ vG+grrknk Medtr5g041530.1 137 DVIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGATRNMIVGAGRRKNKL 194 66789***************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 135 | 193 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-29 | 140 | 193 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.813 | 140 | 194 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 142 | 178 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MTNDSTIKLF GRTIFQTHNT DVTTNDFSSE LEFGSPLPRD DSSDHSPYSS SCSPSEVNSP 60 TEHDAKRYKE TSRKELTSVQ EDEASFQTTE DSKSHTPSSH VENPKSPSSE TETSELNSHK 120 IDEQSDMSQE KSPMKQDVIV PCPRCKSMDT KFCYYNNYNV KQPRHFCKNC QRYWTSGGAT 180 RNMIVGAGRR KNKLNAANGL HSTTILTFGS DSPSMSSTSL DKKVNVASHE ETFDKSYQSF 240 PPQFPWNPAM CYPMSFCPDI AYYGGCLVPS WNVQSCGQNS TTLGKHSRDG NILLHSKSEK 300 EKLGSERCNK RVLIPKTLRI DDPNEIAKSS IWSTLGIKNG GELFMGFASK GGVKNHVQTS 360 SSVLQANPVA LSRSLVFHER I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g041530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT025840 | 0.0 | CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613833.1 | 0.0 | cyclic dof factor 3 | ||||
TrEMBL | G7KGM5 | 0.0 | G7KGM5_MEDTR; Cycling DOF factor 2 | ||||
STRING | AES96791 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17310 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 1e-59 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g041530.1 |
Entrez Gene | 11412800 |
Publications ? help Back to Top | |||
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