PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g041420.1 | ||||||||
Common Name | MTR_5g041420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 323aa MW: 35917.8 Da PI: 7.0773 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.9 | 7.1e-36 | 134 | 194 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+st+tkfCyynny+++qPr+fCk+C+ryWt GG+ rn+ +G+grrknk ss Medtr5g041420.1 134 PDQVVPCPRCKSTDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTTRNMLIGAGRRKNKVSS 194 78999****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-25 | 132 | 191 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-29 | 135 | 191 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.571 | 138 | 192 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 140 | 176 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MINNSTITLF GRTIFITHNI DVSTNDSSSE SEFSPLPHED LSHHSLHSSM SSSSPLEVNS 60 STEHDAKRYK ETSRKELIED EASFQTTEDS ESPTSSSLIE NPKTPSSETE TSQANSTKID 120 EQTDMSQEKS PKKPDQVVPC PRCKSTDTKF CYYNNYNVKQ PRHFCKNCQR YWTSGGTTRN 180 MLIGAGRRKN KVSSSFNSDA SHYHQMSTVL TFGSDSPIMS SSSLDKKGNV GSLEKTFDKS 240 YQSFPQQIPW NPAMCYPVPI YPNIAFCGGC LIPSWSVQSI STQFDEPNKL TLGKHSRDGR 300 LSKGFASNPA ALSRSLLFHE MI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g041420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT025840 | 0.0 | CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613827.1 | 0.0 | cyclic dof factor 5 | ||||
TrEMBL | G7KGL9 | 0.0 | G7KGL9_MEDTR; DOF zinc finger protein | ||||
STRING | AES96785 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17310 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-37 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g041420.1 |
Entrez Gene | 11414982 |
Publications ? help Back to Top | |||
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