PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g041380.1

Common Name

MTR_5g041380

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Dof

Protein Properties

Length: 372aa MW: 41248.6 Da PI: 6.8327

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g041380.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.1	1.1e-34	123	182	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+ +qPr+fCk+C+ryWt GG+ r + vG+grrknk s Medtr5g041380.1 123 PNKILPCPRCKSMDTKFCYYNNYNANQPRHFCKNCQRYWTSGGTTRSMLVGAGRRKNKIS 182 57899****************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	111	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-28	125	180	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.468	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MTNDSTMKLF GRTIFQKHNT DVPTNDSSSE FSPHLAHEDF SDHSLHSSLS SSSPLEENSS 60 NEHDSKRYKE QSRKEPTSVL DYEEASKQTT EDLNIPTTSE TETSLQNSTK IDEQSDMSQD 120 KAPNKILPCP RCKSMDTKFC YYNNYNANQP RHFCKNCQRY WTSGGTTRSM LVGAGRRKNK 180 ISSLSSDASH NCQMSTVLTF GSDSPNMSST SLAKKMNVGS DNETFDKSNQ CFFPQQFPWN 240 PAMCYPVSFQ PNIAYYGGCL VPSWSVQPIT TQSCVPSKPT LGKHSRDGLE NNNKESDNNS 300 VLIPKTLRIE DPIEASKGSN WLTLGIKNGG GLFNGFASMV GDRNHVVEAD SSVLKANPAA 360 LSRSFVFREM I*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MTNDSTMKLF GRTIFQKHNT DVPTNDSSSE FSPHLAHEDF SDHSLHSSLS SSSPLEENSS  60
NEHDSKRYKE QSRKEPTSVL DYEEASKQTT EDLNIPTTSE TETSLQNSTK IDEQSDMSQD  120
KAPNKILPCP RCKSMDTKFC YYNNYNANQP RHFCKNCQRY WTSGGTTRSM LVGAGRRKNK  180
ISSLSSDASH NCQMSTVLTF GSDSPNMSST SLAKKMNVGS DNETFDKSNQ CFFPQQFPWN  240
PAMCYPVSFQ PNIAYYGGCL VPSWSVQPIT TQSCVPSKPT LGKHSRDGLE NNNKESDNNS  300
VLIPKTLRIE DPIEASKGSN WLTLGIKNGG GLFNGFASMV GDRNHVVEAD SSVLKANPAA  360
LSRSFVFREM I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g041380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT025840	0.0	CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613823.1	0.0	cyclic dof factor 1
TrEMBL	G7KGL5	0.0	G7KGL5_MEDTR; DOF domain, zinc finger protein
STRING	AES96781	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17310	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	5e-66	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Medtr5g041380.1
Entrez Gene	11427755

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]