PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g041350.1

Common Name

MTR_5g041350

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 354aa MW: 40164.3 Da PI: 6.1964

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g041350.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.7e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF++a++qLGG++kAtPk+i+++m+++gLtl+h+kSHLQkYRl Medtr5g041350.1 15 KPRLKWTPELHQRFIDAINQLGGADKATPKSIMRVMEIPGLTLYHLKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.793	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-31	13	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-17	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-24	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-20	112	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQNQSMHFVL STDAKPRLKW TPELHQRFID AINQLGGADK ATPKSIMRVM EIPGLTLYHL 60 KSHLQKYRLG KSQQLETCSD NKKQVYTETM SWDEQCSREI GQGDHNQITE NMEISHALEM 120 QMEVERKLNE QIEVQKHLQL RIDAQGKYLQ SVLMKAQEAL SGYNSSPIGI KLTKDELSQL 180 VTMINNACPS SPISDLTESR GLSLNYEERK HENGTSLCSL ESSLTSSESS ERKEEKHSLE 240 DIRDFKNSSA ISLELPLMAM HSEEKSLSCP MSVSVLRSDD SSNEANGRKR NEETKFDGSY 300 VENDSLRKRC GNKLKKAKLS EKFDLNRQCQ NDMESTSSKM LLDLNCSLNF CEP*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQNQSMHFVL STDAKPRLKW TPELHQRFID AINQLGGADK ATPKSIMRVM EIPGLTLYHL  60
KSHLQKYRLG KSQQLETCSD NKKQVYTETM SWDEQCSREI GQGDHNQITE NMEISHALEM  120
QMEVERKLNE QIEVQKHLQL RIDAQGKYLQ SVLMKAQEAL SGYNSSPIGI KLTKDELSQL  180
VTMINNACPS SPISDLTESR GLSLNYEERK HENGTSLCSL ESSLTSSESS ERKEEKHSLE  240
DIRDFKNSSA ISLELPLMAM HSEEKSLSCP MSVSVLRSDD SSNEANGRKR NEETKFDGSY  300
VENDSLRKRC GNKLKKAKLS EKFDLNRQCQ NDMESTSSKM LLDLNCSLNF CEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.1869	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g041350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT137363	0.0	BT137363.1 Medicago truncatula clone JCVI-FLMt-17O6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613820.1	0.0	myb family transcription factor PHL8
Swissprot	F4I274	3e-74	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	G7KGL2	0.0	G7KGL2_MEDTR; Myb-like transcription factor family protein
STRING	AES96778	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	6e-75	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr5g041350.1
Entrez Gene	11418060

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]