PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g032820.1
Common NameMTR_5g032820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 363aa    MW: 40096 Da    PI: 7.3108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g032820.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-184594255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Medtr5g032820.1 45 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 94
                     69*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.11545102IPR001471AP2/ERF domain
SMARTSM003801.1E-3245108IPR001471AP2/ERF domain
CDDcd000184.77E-3045101No hitNo description
PfamPF008473.0E-114594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2945101IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2145102IPR016177DNA-binding domain
PRINTSPR003672.0E-94657IPR001471AP2/ERF domain
PRINTSPR003672.0E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEEALNRLNG TTPPTIQEPD TKKSTNKRTS RDNTASAAGG GGALRYRGVR RRPWGRYAAE  60
IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGLKARTN FVYPTSPPPN TTFPSFNFPK  120
HSQAFEKTST NNRHVASCGW SEPHGVDFTH QRNPSTSSLD MLLFREFINS SNSNSSSAHN  180
HFHDNFPYSY NKSSTSSGSG FVAGCCMANS CGGGANSNHQ NTGVDGNNGS KISTDEDFEF  240
FPKESSDSGL LEEIVNRFLP KPKQEIKTEI LPKTTFCDTF VPNAPVFDHT LGKSVTKNEF  300
SGVGFDQNGF NMQQFENFHN GYNGSFQSLP LGNEQIMVNH TENSVIQYQE LLNAFALRMQ  360
NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19451011471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g032820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194140.0AC119414.51 Medicago truncatula clone mth2-23d7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613106.10.0ethylene-responsive transcription factor ESR2
TrEMBLG7JXS90.0G7JXS9_MEDTR; AP2 domain class transcription factor
STRINGAES960640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-13DORNROSCHEN-like
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]