PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g032600.1 | ||||||||
Common Name | MTR_5g032600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 273aa MW: 29698.9 Da PI: 7.2514 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.2 | 1.7e-32 | 75 | 130 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k+rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt ++lkCaAC+CHRnFHR+e++ Medtr5g032600.1 75 KARYRECLKNHAVGIGGHALDGCGEFMPA-GSEGTLESLKCAACNCHRNFHRKESSA 130 789*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 76 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-29 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-30 | 77 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.647 | 78 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.79E-18 | 199 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-30 | 199 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-25 | 209 | 265 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDFDEDQEEE QDEELCMGGG NYDSLPNSSR VVKMPGGTEP IMVTHPLRNI LNNNNNNNNN 60 NNGNSNIGGV VGNGKARYRE CLKNHAVGIG GHALDGCGEF MPAGSEGTLE SLKCAACNCH 120 RNFHRKESSA DVTAGDPFLL THHHHHPPPP PQFAAYYRTP AGYLHVSGQQ RTGTLALPST 180 SGGGGGTQST REELEDVSNP SGGGSGSSKK RHRTKFTQEQ KDKMLELAEK LGWRIQKHDE 240 GLVQEFCNES GVKRHVLKVW MHNNKHTLGK KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-24 | 209 | 267 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11827 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g032600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR931809 | 0.0 | CR931809.1 Medicago truncatula chromosome 5 clone mth2-35j21, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613092.2 | 0.0 | zinc-finger homeodomain protein 1 | ||||
Swissprot | A2Z259 | 1e-75 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | G7JXR5 | 0.0 | G7JXR5_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | AES96050 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-60 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g032600.1 |
Entrez Gene | 11405810 |
Publications ? help Back to Top | |||
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