PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g032600.1
Common NameMTR_5g032600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 273aa    MW: 29698.9 Da    PI: 7.2514
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g032600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.21.7e-3275130359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      k+rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt ++lkCaAC+CHRnFHR+e++ 
  Medtr5g032600.1  75 KARYRECLKNHAVGIGGHALDGCGEFMPA-GSEGTLESLKCAACNCHRNFHRKESSA 130
                      789*************************9.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2176130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2976128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3077127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.64778127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-18199270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-30199271IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25209265IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDFDEDQEEE QDEELCMGGG NYDSLPNSSR VVKMPGGTEP IMVTHPLRNI LNNNNNNNNN  60
NNGNSNIGGV VGNGKARYRE CLKNHAVGIG GHALDGCGEF MPAGSEGTLE SLKCAACNCH  120
RNFHRKESSA DVTAGDPFLL THHHHHPPPP PQFAAYYRTP AGYLHVSGQQ RTGTLALPST  180
SGGGGGTQST REELEDVSNP SGGGSGSSKK RHRTKFTQEQ KDKMLELAEK LGWRIQKHDE  240
GLVQEFCNES GVKRHVLKVW MHNNKHTLGK KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-242092671775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118270.0leaf
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g032600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9318090.0CR931809.1 Medicago truncatula chromosome 5 clone mth2-35j21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613092.20.0zinc-finger homeodomain protein 1
SwissprotA2Z2591e-75ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLG7JXR50.0G7JXR5_MEDTR; Homeobox domain, ZF-HD class protein
STRINGAES960500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-60homeobox protein 22
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]