PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g030770.2

Common Name

MTR_5g030770

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 320aa MW: 36017.9 Da PI: 4.6914

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g030770.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	158	201	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Medtr5g030770.2 158 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 201 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-15	155	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	158	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-15	159	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.62E-5	159	206	No hit	No description
CDD	cd04873	4.11E-4	245	286	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MELSQLGFLE ELLAPRKDTW NTLSTGLNEL LLPNGWTFDS FDENLLINPS LNPSFASFST 60 PLDHRFECPY GTDASSLSYP YLDGFSVPEF DDSAPVLPQQ ESIEEFGFVG SENKRFEESK 120 ISCKVEEQVS ETPVFNMGLC GEKKAKSKRV EGQPSKNLMA ERRRRKRLND RLSMLRSIVP 180 KISKMDRTSI LGDTIDYMKE LLERISKLQE EIEKEGTNQI NLLGISKELK PNEVMFDVER 240 RDQDTRISIC CATKPGLLLS TVNTLEALGL EIHQCVISSF NDFSLQASCS EVAGQRNCMN 300 PEEIKQSLFR NAGYGGRCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	167	ERRRRKRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.1394	0.0	root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g030770.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU459036	0.0	CU459036.1 Medicago truncatula chromosome 5 clone mte1-64g13, COMPLETE SEQUENCE.
GenBank	EU306659	0.0	EU306659.1 Medicago truncatula zinc finger protein, GH1 protein, hydroxyproline-rich glycoprotein, and bHLH transcription factor genes, complete cds; LTR-retrotransposon, complete sequence; beta-D-xylosidase, glycine-rich protein, putative protein, ABC transporter, NORK, BRICK1, oligopeptidase A, serine-hydroxymethyltransferase, and MADS-box protein genes, complete cds; tRNA-Ile genes, complete sequence; lectin gene, complete cds; LTR-retrotransposon, complete sequence; lectin genes, complete cds; and hypothetical protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013453691.1	0.0	transcription factor bHLH93 isoform X2
Swissprot	Q9LSL1	5e-79	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A072UDL7	0.0	A0A072UDL7_MEDTR; Transcription factor bHLH93
STRING	AES95896	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	5e-81	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Medtr5g030770.2
Entrez Gene	11409352

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]