PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g029470.1
Common NameMTR_5g029470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 403aa    MW: 45341.1 Da    PI: 8.9877
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g029470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-32220273255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Medtr5g029470.1 220 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 273
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15217273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28218273IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23220273IPR006447Myb domain, plants
PfamPF002492.7E-7221272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNTK QTTTSNWKRT TTTEEEMDLG FWKRALDSRN SLSSSMASSK  60
TDNYSFDLSL SNPTKPLDSN NNTSNNLIHH HHFQNSGNNN ANNPYQSFHQ NNYFQHPHPQ  120
PLFQHHQPHQ QHQSLSQELG FLRPIRGIPV YQNPPPLSFP QLHNHNHNLN HLHILDGTTT  180
TTPSSISNTN NTSSSPFQSQ ALMRSRFLSR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG  240
GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDRV GASSGQSDVY DNGSSGDNSD  300
DIMFDINSSR RSSDLSIKQQ GRSSVNQDKE CYGLWSNSSR EAWLHGKPKV DSIGNMQSLE  360
KEMDPKCLSY ERISDGSSST NLSGSSPKKP NLDLEFTLGQ PL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-17221275458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.172430.0flower| leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g029470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1250380.0EF125038.1 Medicago truncatula MYB transcription factor MYB34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612825.10.0probable transcription factor KAN2
SwissprotQ9C6161e-100KAN2_ARATH; Probable transcription factor KAN2
TrEMBLG7KCD80.0G7KCD8_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES957830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-67G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]