PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g027030.1
Common NameMTR_5g027030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 325aa    MW: 36395.5 Da    PI: 9.216
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g027030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC67.61.7e-2169113145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRC r++ +++k+C+rH+ r r rsrk++e+
  Medtr5g027030.1  69 DPEPGRCRRTDGKKWRCARDAHPDSKYCDRHMIRRRYRSRKPVES 113
                      79****************************************997 PP
2QLQ545e-191651237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FT +Q+q+L++Q+l++KyL a++ vPp+Ll++i+k
  Medtr5g027030.1 16 PFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRK 51
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-101551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-141650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.9921651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.95469113IPR014977WRC domain
PfamPF088791.9E-1870112IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSIQQPPLMW SPTHPPFTVS QWQELEHQAL IFKYLKAGLS VPPDLLLPIR KSLQFMSHPS  60
LGYYGKKIDP EPGRCRRTDG KKWRCARDAH PDSKYCDRHM IRRRYRSRKP VESSSSSSCS  120
QSSSSVSATT SQGGSSGSTS TVSASVTATS TFQTLPLHTN GTREGLSFNL GNTVPHMDPM  180
LLPLQGSKKP YRFGLNSEAE ENNLLQKDLG SVKYQGYDFT SDGMWYNNMS QISSNTVSES  240
RNGSSMVDNY NFQQRTTREP ELFNLDAARS KEIVFNGQLG SLKQEYPSSQ SLFSDWQWKK  300
DLASSGVEYR PSKDFNTNPD VNVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g027030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4695550.0CU469555.2 Medicago truncatula chromosome 5 clone mth4-28c15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612622.10.0growth-regulating factor 5
TrEMBLG7K6W00.0G7K6W0_MEDTR; Growth-regulating factor
STRINGAES955800.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149481112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-39growth-regulating factor 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]