PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g024070.1

Common Name

MTR_5g024070

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Nin-like

Protein Properties

Length: 331aa MW: 38233.9 Da PI: 7.007

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g024070.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.9e-28	199	248	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l+dl+kyF++pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Medtr5g024070.1 199 AKITLSDLAKYFDMPIAEASNNLNVGLTVLKRKCREFGIPRWPHRKIKSL 248 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.657	183	268	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-23	200	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDSSLITLLL FNNTIQPELM RSVHVYRECD GGEKEVEREF VFSENGSYVE MKATPILRLL 60 KSFVCEEIFE GYKNGVWLCV FAFHAYNVPQ FSHIPTFLLV TRNPKLQAIP NLLNDLHMIY 120 KLEPKKEQKS TPESSASEEL KGNNNDFQPP KKVLPVLNQD LNCLPYEEDE AELLDDETDF 180 GSSAGFLGKK KRAASDHVAK ITLSDLAKYF DMPIAEASNN LNVGLTVLKR KCREFGIPRW 240 PHRKIKSLDS LIHDLQEEAK HQEMEDKDAA MAVIRRQKML ESEKENIEKR PFMDIQIETK 300 RFRQDIFKRR HRARVIEKQN LQLQAPKPSN *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g024070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU475568	1e-140	CU475568.2 Medicago truncatula chromosome 5 clone mth2-61f16, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003612350.1	0.0	protein RKD5
Swissprot	O81791	5e-95	RKD5_ARATH; Protein RKD5
TrEMBL	G7K041	0.0	G7K041_MEDTR; Plant regulator RWP-RK family protein
STRING	AES95308	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-93	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Medtr5g024070.1
Entrez Gene	11426252

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]