PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g019750.1

Common Name

MTR_036s0073, MTR_5g019750

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRAS

Protein Properties

Length: 296aa MW: 33956.6 Da PI: 8.4051

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g019750.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	147.1	1.7e-45	63	294	134	374
GRAS 134 sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227 s+ ++p lRiT++ ++ + + e ++e+L++f +e g++++ ++++ +++e l++++ ++ gE++aV l+ +++r + ++ + +++ Medtr5g019750.1 63 SKIASPLILRITAIFHE--DYALESTIVHENLTQFGREQGIQIQVEFVLLQTFEILSFKAVKFLDGEKTAVLLSPEIFRRFGSDEN----ASAF 150 45567779******4..5999999***************************************************944444....556 PP GRAS 228 LklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 L v+s+sP vvv+v+ e ++ ++sF ++++le+y+++++sl ++ ++ +e+ + +E + l+++i va eg ++ + W++ Medtr5g019750.1 151 LLDVQSVSPIVVVFVDGEgwTEAaVESSFRCVVVNSLEFYVMMMESLdASVVGGGKEWVKRIEMMHLRPKIL--VAVEGCG-----RRISPWKD 237 ****************443334567****************5455677779999*******7..5555555.....4599 PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ aG+kpv+ls +a+ a++ll+k +++g++v +++++lvl+W++r++v++SaWr Medtr5g019750.1 238 MFHGAGLKPVQLSRFAEFHAECLLAKSQVRGFHVAKREAELVLCWHERAMVATSAWR 294 ******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.606	1	274	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-43	63	294	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MRAKIERYKS CVRCIYDESV WSRWMVDGRP LQMVFHQCRT RVPYISLRTF WVQFKRRHDI 60 ASSKIASPLI LRITAIFHED YALESTIVHE NLTQFGREQG IQIQVEFVLL QTFEILSFKA 120 VKFLDGEKTA VLLSPEIFRR FGSDENASAF LLDVQSVSPI VVVFVDGEGW TEAAVESSFR 180 CVVVNSLEFY VMMMESLDAS VVGGGKEWVK RIEMMHLRPK ILVAVEGCGR RISPWKDMFH 240 GAGLKPVQLS RFAEFHAECL LAKSQVRGFH VAKREAELVL CWHERAMVAT SAWRC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g019750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147178	0.0	AC147178.6 Medicago truncatula clone mth2-142i4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019421741.1	1e-110	PREDICTED: scarecrow-like protein 15
Swissprot	O23210	2e-76	SCL15_ARATH; Scarecrow-like protein 15
TrEMBL	G7KC84	0.0	G7KC84_MEDTR; GRAS family transcription factor
STRING	AES83425	0.0	(Medicago truncatula)
STRING	AES94916	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5959	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	9e-72	GRAS family protein

Link Out ? help Back to Top
Phytozome	Medtr5g019750.1
Entrez Gene	11412135

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]