PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g019680.1 | ||||||||
Common Name | MTR_5g019680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 24669.9 Da PI: 7.0633 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.5 | 7e-21 | 53 | 107 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq+++Lee F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Medtr5g019680.1 53 KKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKN 107 56699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 113.9 | 9.6e-37 | 52 | 144 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kkr+ls+eqv++LEe+F +e+kLe+e+K +la eLgl+prqvavWFqnrRAR+k+k+lE++y +Lk+++++ e++ Le+++ +Lre+l+e Medtr5g019680.1 52 NKKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKNHESTILEKCLLETKMLKLREQLSE 144 59****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.346 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-18 | 51 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-18 | 52 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.27E-14 | 53 | 109 | No hit | No description |
Pfam | PF00046 | 3.8E-18 | 53 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 55 | 114 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MNHQDQMMLM SQLFPACEYT QIISQQGEKK PKPRRKRSKK NKGGENSAND MNKKRKLSDE 60 QVNILEENFG NEHKLESEKK DRLAMELGLD PRQVAVWFQN RRARWKNKKL EEEYFSLKKN 120 HESTILEKCL LETKMLKLRE QLSEAEKEIQ RLREPNSSSS TSSISQFMEV VDPQFHDEFE 180 VNHIYNDDVF FMPDATYYFN GQEWINV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 55 | RKRSKKNKGGENSANDMNKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15817 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g019680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR962121 | 0.0 | CR962121.2 Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611950.1 | 1e-153 | homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_024638976.1 | 1e-153 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-58 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | G7KC76 | 1e-152 | G7KC76_MEDTR; Homeobox leucine zipper protein | ||||
STRING | AES94908 | 1e-153 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-53 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g019680.1 |
Entrez Gene | 11405858 |
Publications ? help Back to Top | |||
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