PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g018860.1
Common NameMTR_5g018860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 752aa    MW: 82811.2 Da    PI: 6.1794
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g018860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-095445811954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Medtr5g018860.1 544 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 581
                      554459******************************88 PP
2BELL121.82.8e-39405476172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF++++g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Medtr5g018860.1 405 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVMMGFGAAVPYTALAQKAMSRHFRCLKDAITTQV 476
                      589******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-72333474IPR006563POX domain
PfamPF075266.7E-51338473IPR006563POX domain
PROSITE profilePS5007112.568522585IPR001356Homeobox domain
CDDcd000865.73E-12525586No hitNo description
SMARTSM003897.2E-10525589IPR001356Homeobox domain
SuperFamilySSF466893.51E-17526592IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28528591IPR009057Homeodomain-like
PfamPF059203.8E-18542581IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MGVASPVPFP SSSSYSSIIQ LKTHQNQRTL DCSTSNSMSQ DYQQAIFGFS SNGFERSSSS  60
QQQQQQQQQI QRDKVRLLQG LNLSEGEGDE RGGVYETAGM LSEMFNFADP STAELLETAT  120
FRSSSSSSSR QLPQTTASEN DWYGNNNRQG IQQHQQQISS INVADDSAAA MQLFLMNPSQ  180
SHQTTTSSSS PPPTHHQNSS TLHMLLPNPP NNSLQGFPNS GNFGQFTWNS TTTTHQEGAV  240
EGQSVQGLSL SLSSSLEAAK AEEELRMGGG GGDGGSFMYN NYNIQGGSGG PSSSTYPYKL  300
NHQQALNLQL QGGGTINGYQ LLQSHNQGQG YGSVVVNVLR NSKYMKPTQE LLQEFCSVGR  360
GQFIKKTKFN RQNSSNPNNC SSNVGDSIPS SSSKDTPPLP LSAADRIEHQ RRKVKLLSML  420
DEVDRRYNHY CEQMQMVVNS FDVMMGFGAA VPYTALAQKA MSRHFRCLKD AITTQVKQSC  480
ELLGEKEGAG GGLTKGETPR LKVLEQSLRQ QRAFHQMGMM DQEAWRPQRG LPDRSVNVLR  540
AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQELNEAEV  600
EAEDREMNQS NSNNSGHQTQ TPPTSTATAT EPPPPQKRSD INAAENDPSL VAINRQQDFS  660
ENQAMQSTTT INTTVSEVVV PPFDSDLPPH RSMAMDDTCR YGSLVAEDYE TGSDIGSSTL  720
IRFGSTTGDV SLTLGLRHAG NVHDKNNNFL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16531589563Homeobox protein Meis2
3k2a_B5e-16531589563Homeobox protein Meis2
4xrm_A5e-16531589563Homeobox protein Meis2
4xrm_B5e-16531589563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.177890.0leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g018860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267790.0AC126779.19 Medicago truncatula clone mth2-34m14, complete sequence.
GenBankCR9318070.0CR931807.1 Medicago truncatula chromosome 5 clone mte1-84j2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611874.10.0BEL1-like homeodomain protein 2
SwissprotQ9SW801e-174BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLG7KAR90.0G7KAR9_MEDTR; BEL1-related homeotic protein
STRINGAES948320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-134BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]