PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g018380.1 | ||||||||
Common Name | MTR_5g018380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 179aa MW: 20951.1 Da PI: 10.649 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.3 | 3.1e-18 | 123 | 178 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 D y+W KY +K++kgs r Y C++ +Cp+kk +r+++dp+vv++tY+geH+h+ Medtr5g018380.1 123 PDSYTWLKYDRKQIKGS--IRDYSECSTVNCPAKKYEDRARDDPTVVIVTYNGEHTHP 178 69**************9..69************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-16 | 116 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.223 | 117 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-15 | 119 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-9 | 122 | 178 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-13 | 124 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MPTLRKRSRR EIVENPPQSE IEIPMKDHKN KKSEYELSRE ERIRENRERM GKLGLFDISL 60 SLKPNPPSRP TASKKPKSPV SLKPSRRSTR LQNVAPIRYT EEAINKRIYW KKKVKKTPSK 120 LMPDSYTWLK YDRKQIKGSI RDYSECSTVN CPAKKYEDRA RDDPTVVIVT YNGEHTHP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g018380.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT149022 | 0.0 | BT149022.1 Medicago truncatula clone JCVI-FLMt-1G5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611835.1 | 1e-127 | probable WRKY transcription factor 65 | ||||
TrEMBL | G7K9F0 | 1e-125 | G7K9F0_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES94793 | 1e-126 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 3e-15 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g018380.1 |
Entrez Gene | 11425311 |
Publications ? help Back to Top | |||
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