PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g017980.3 | ||||||||
Common Name | MTR_5g017980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 325aa MW: 36428.8 Da PI: 6.3557 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.5 | 2e-30 | 192 | 246 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGG++ AtPk+i+e m+v+gLt+++vkSHLQkYRl+ Medtr5g017980.3 192 KQRRCWSSELHRRFVDALQQLGGAH-ATPKQIREKMQVDGLTNDEVKSHLQKYRLH 246 79*******************9988.****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-29 | 189 | 249 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.989 | 189 | 248 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.69E-18 | 190 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-26 | 192 | 246 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-7 | 194 | 244 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MEQQQQLNLD LTLASVPKTV SHFLNNVVQT KDMSQKLSML DDLVHSLEEE MKKVLAFKRE 60 LPLSILLLND AIARLNDEKE KVRLMKMDDL KENCDNKKNW MSSAQLWTNE TKSNEGDDDR 120 TVLHKGNGGE VFMGFTENLL KEVSQAKSFS LVSEVSHGNS KSGGGSSGSS LLRVEIQNQP 180 QPPQPLQQSS RKQRRCWSSE LHRRFVDALQ QLGGAHATPK QIREKMQVDG LTNDEVKSHL 240 QKYRLHVRRF PVSSIQEANK LALYMAHDQC EEDTSEGNFS ESVSPQGPLT PLLLGGSAQG 300 LSSHGRNSMD AEDEQSDCRN WKSD* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.13618 | 0.0 | flower| glandular trichome| leaf |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g017980.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU013515 | 1e-173 | CU013515.2 Medicago truncatula chromosome 5 clone mth2-106f22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024639430.1 | 0.0 | transcription factor HHO5 isoform X3 | ||||
TrEMBL | A0A072UEL3 | 0.0 | A0A072UEL3_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES94757 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-55 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g017980.3 |
Entrez Gene | 11416542 |
Publications ? help Back to Top | |||
---|---|---|---|
|