PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g017980.1 | ||||||||
Common Name | MTR_5g017980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 36628.1 Da PI: 6.5166 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.5e-32 | 193 | 248 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGG++ AtPk+i+e m+v+gLt+++vkSHLQkYRl+ Medtr5g017980.1 193 KQRRCWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLH 248 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.752 | 190 | 250 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-29 | 190 | 251 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-17 | 191 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-27 | 193 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 195 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MEQQQQLNLD LTLASVPKTV SHFLNNVVQT KDMSQKLSML DDLVHSLEEE MKKVLAFKRE 60 LPLSILLLND AIARLNDEKE KVRLMKMDDL KENCDNKKNW MSSAQLWTNE TKSKNEGDDD 120 RTVLHKGNGG EVFMGFTENL LKEVSQAKSF SLVSEVSHGN SKSGGGSSGS SLLRVEIQNQ 180 PQPPQPLQQS SRKQRRCWSS ELHRRFVDAL QQLGGAHAAT PKQIREKMQV DGLTNDEVKS 240 HLQKYRLHVR RFPVSSIQEA NKLALYMAHD QCEEDTSEGN FSESVSPQGP LTPLLLGGSA 300 QGLSSHGRNS MDAEDEQSDC RNWKSD* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.13618 | 0.0 | flower| glandular trichome| leaf |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g017980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU013515 | 1e-175 | CU013515.2 Medicago truncatula chromosome 5 clone mth2-106f22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611799.1 | 0.0 | transcription factor HHO5 isoform X1 | ||||
TrEMBL | A0A396HTM4 | 0.0 | A0A396HTM4_MEDTR; Putative transcription factor MYB-HB-like family | ||||
TrEMBL | G7K832 | 0.0 | G7K832_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES94757 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 9e-58 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g017980.1 |
Entrez Gene | 11416542 |
Publications ? help Back to Top | |||
---|---|---|---|
|