PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g015880.1 | ||||||||
Common Name | MTR_5g015880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25123.8 Da PI: 8.0919 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.2 | 1.7e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Medtr5g015880.1 2 SCNGCRVLRKGCSESCILRPCIqwidtPEAQGHATVFVAKFFGRADLMSFISNVPLPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6********************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Medtr5g015880.1 96 AAVETVLR 103 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.363 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCIQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPLPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPL PEFLGLDALA 120 STVDDSSEGE VTCNDARKIR DPNPKVRFMS SGGKRKRSGG EVLKLPATTD LNLRLTPQST 180 LTNGCRKEIR RPGTPSMNSE ESVTTVTCLE SGIGEDNYVH DGDRKVLNLF V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8620 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g015880.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143032 | 0.0 | BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611614.1 | 1e-171 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 2e-79 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | G7K3V2 | 1e-169 | G7K3V2_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES94572 | 1e-170 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-80 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g015880.1 |
Entrez Gene | 11421111 |
Publications ? help Back to Top | |||
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