PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014600.1
Common NameMTR_5g014600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 335aa    MW: 37064.8 Da    PI: 8.3708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12149195455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++i ++f  L  llP +     kK++Ka++L  A++++k+Lq
  Medtr5g014600.1 149 DHIIAERKRREKISQKFIALSALLPDL-----KKMDKASVLGDAINHVKQLQ 195
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16149208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-12150199No hitNo description
SMARTSM003535.9E-14151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTSNHESWTS WLCDLEPEDY NIINEINIAT LPQENNNLQQ SFSGGSHCSH TTSNTMSNSS  60
GDVNKTNPSN IGYPSLPKKD SSHSYILCFG NENPESMLNI GSTLKPKGKV SNHGKSLASK  120
GSLENQKKGP KRNIQESKKT DSAARNAQDH IIAERKRREK ISQKFIALSA LLPDLKKMDK  180
ASVLGDAINH VKQLQEKVKL LEEKNQKNNV ESVSMVYVEK TKSYSSDEDV SETSSNSGYG  240
NCCHTHTSKP SRSLPEVEAR VSEKNVLIRV HCEKHKGALM NIIQEIENLH LSVTSSSALL  300
FGTTKLDITI IAEMDEKFSL SVQELARKLR VVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13149215876Transcription factor MYC2
5gnj_B5e-13149215876Transcription factor MYC2
5gnj_E5e-13149215876Transcription factor MYC2
5gnj_F5e-13149215876Transcription factor MYC2
5gnj_G5e-13149215876Transcription factor MYC2
5gnj_I5e-13149215876Transcription factor MYC2
5gnj_M5e-13149215876Transcription factor MYC2
5gnj_N5e-13149215876Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRE
2154159RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.93680.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329630.0CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE.
GenBankCR9550040.0CR955004.2 Medicago truncatula chromosome 5 clone mte1-9e19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611499.10.0transcription factor bHLH18
TrEMBLG7K1310.0G7K131_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944570.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-53bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]