PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g012910.1
Common NameMTR_5g012910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 182aa    MW: 20226.3 Da    PI: 4.8749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g012910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-192776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g
  Medtr5g012910.1 27 LYRGVRMRS-WGKWVSEIREPKK---KSRIWLGTYPTPEMAARAHDVAAQAIKG 76
                     69****998.**********854...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-332686No hitNo description
PfamPF008473.0E-132676IPR001471AP2/ERF domain
SMARTSM003805.1E-372790IPR001471AP2/ERF domain
PROSITE profilePS5103222.5892784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-312785IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-212785IPR016177DNA-binding domain
PRINTSPR003673.5E-102839IPR001471AP2/ERF domain
PRINTSPR003673.5E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQQVSVSSSS IEDNKTKNNG DNGKHPLYRG VRMRSWGKWV SEIREPKKKS RIWLGTYPTP  60
EMAARAHDVA AQAIKGSSAY LNFPELAQQL PRPTTNSPKD IQAAAAKAAT MGSLHEAQDQ  120
DHDIQETLND EDDTFYDLPD LLLDSNKSSS EFHYSSMSWL VAGAEYPNPS FGLDEPFPWE  180
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-161884572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g012910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5735020.0CT573502.2 Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611338.11e-133ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ77e-54ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLG7JXD91e-132G7JXD9_MEDTR; Ethylene response factor
STRINGAES942961e-133(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]