PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g011070.1 | ||||||||
Common Name | MTR_5g011070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 306aa MW: 34508.9 Da PI: 6.6498 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.1 | 1.2e-07 | 241 | 274 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Medtr5g011070.1 241 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 274 469*****************************87 PP | |||||||
2 | ELK | 25.4 | 3.2e-09 | 195 | 216 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Medtr5g011070.1 195 ELKIELKQGFKSRIEDVREEIL 216 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.4E-19 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-17 | 27 | 68 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.7E-23 | 80 | 135 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.4E-16 | 83 | 134 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 195 | 215 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 215 | 278 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 217 | 282 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.3E-11 | 217 | 282 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.74E-11 | 218 | 279 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 222 | 280 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 235 | 274 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MQEPSLGMMQ GSGGGYGGDG GGENRQLKAE IATHPLYEQL LSAHVACLRV ATPIDQLPLI 60 DAQLSQSHHL LRSYISQQTH SLSPHDRQQL DNFLAQYLIV LCTFKEQLQQ HVRVHAVEAV 120 MACRDIENTL QALTGVSLGE GSGATMSDDE DEQLQMDYGL DNQSSGGGGD HDMMGLGPLL 180 PTESERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR AGKLPGDTTS VLKNWWQQHA 240 KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSVTSLKSKR KRVYCRPSNE 300 MHQEI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 7e-13 | 218 | 274 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 271 | 291 | RKRNWHSNSQSVTSLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.2602 | 0.0 | flower| root| seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g011070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF128059 | 0.0 | EF128059.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611171.1 | 0.0 | homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-168 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | G7KES2 | 0.0 | G7KES2_MEDTR; Class II knotted-like homeobox protein | ||||
STRING | AES94129 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-157 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g011070.1 |
Entrez Gene | 11437517 |
Publications ? help Back to Top | |||
---|---|---|---|
|