PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g010940.1 | ||||||||
Common Name | MTR_5g010940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25939.3 Da PI: 7.4527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 52 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++k +++Wv+e r+p++ n+ + r++lg++ t+e+Aa+a++ a++ l+g Medtr5g010940.1 52 PVYRGVRRRK-NNKWVCEMRVPNNivNKnNKSRIWLGTYPTPEMAARAHDVAALTLKG 108 68*****999.8*********9777876556***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-14 | 52 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-25 | 53 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-19 | 53 | 118 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.707 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-28 | 53 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.80E-26 | 54 | 118 | No hit | No description |
PRINTS | PR00367 | 2.3E-7 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDFFMSSFSD YSDTSSSETA SSNRTSSSEV ILAPARPKKR AGRRVFKETR HPVYRGVRRR 60 KNNKWVCEMR VPNNIVNKNN KSRIWLGTYP TPEMAARAHD VAALTLKGKS ACLNFADSAW 120 RLRLPESNDA TEIRRAAMEA AQLFAVEDKQ CCVTVEDGVF MDMEDSKNML EAQVPVVSSE 180 FEDMHHLLLS IANEPLRSAP PSPTNYGSYN WGDMEIFDTQ LVSLWNFSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.23141 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00137 | DAP | Transfer from AT1G12610 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g010940.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146573 | 0.0 | AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611158.1 | 1e-172 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9LN86 | 3e-54 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | G7KDI1 | 1e-171 | G7KDI1_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | AES94116 | 1e-172 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g010940.1 |
Entrez Gene | 11441008 |