PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g010910.1 | ||||||||
Common Name | MTR_5g010910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25410.8 Da PI: 6.9251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 47 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++k +++Wv+e r+p++ n+ + r++lg++ t+e+Aa+a++ a++ l+g Medtr5g010910.1 47 PVYRGVRRRK-NNKWVCEMRVPNNivNKnNKSRIWLGTYPTPEMAARAHDVAALTLKG 103 68*****999.8*********9777876556***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-14 | 47 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.707 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-28 | 48 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-25 | 48 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-19 | 48 | 113 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.52E-26 | 49 | 113 | No hit | No description |
PRINTS | PR00367 | 2.2E-7 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDFFMSSFGE YSDTSSSETS SSEVILASVN KPKKRAGRRV FKETRHPVYR GVRRRKNNKW 60 VCEMRVPNNI VNKNNKSRIW LGTYPTPEMA ARAHDVAALT LKGKSACLNF ADSAWRLRLP 120 ESNDATEIRR AAMEAAQLFA VEDKQCCVTV EDGVFMDMED SKNMLEAQVP VVSSEFEDMH 180 HLLLSIANEP LRSAPPSPTN YGSYNWGDME IFDTQLVSLW NFSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.23141 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g010910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146573 | 0.0 | AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611155.1 | 1e-169 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9LN86 | 9e-53 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | G7KDH8 | 1e-167 | G7KDH8_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | AES94113 | 1e-168 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g010910.1 |
Entrez Gene | 11438570 |