PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g010650.1
Common NameMTR_5g010650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 477aa    MW: 53834.8 Da    PI: 8.1642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g010650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1357102346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 
                       WT+eEd ll++ vk++ g  Wk+I  +     gRt+ +c +rwqk
  Medtr5g010650.1  57 IWTEEEDNLLIEIVKMHDGSIWKSIGGCAAyfPGRTDIECFHRWQK 102
                      5************************88877777************9 PP
2Myb_DNA-binding60.53.5e-19111156248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +WT+eEde l+++v+++G ++W+ Ia+ m+ gR +kqc++rw++ l
  Medtr5g010650.1 111 RSWTKEEDEALIELVRKYGFKRWSFIAKSMP-GRIGKQCRERWHNNL 156
                      68*****************************.************975 PP
3Myb_DNA-binding537.8e-17162205146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+WT+eE+ +l+++ + +G++ W+ Iar ++ gR+++ +k++w++
  Medtr5g010650.1 162 KGAWTEEEESILAHYYQIYGSK-WSEIARVLP-GRSDNAIKNHWNS 205
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.45450104IPR017877Myb-like domain
SuperFamilySSF466892.94E-1151108IPR009057Homeodomain-like
SMARTSM007179.3E-854106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1557115IPR009057Homeodomain-like
CDDcd001671.46E-1058103No hitNo description
PfamPF002496.4E-1058102IPR001005SANT/Myb domain
PROSITE profilePS5129430.619105160IPR017930Myb domain
SuperFamilySSF466897.7E-32107203IPR009057Homeodomain-like
SMARTSM007171.0E-18109158IPR001005SANT/Myb domain
CDDcd001675.49E-17112156No hitNo description
PfamPF139215.3E-18113171No hitNo description
Gene3DG3DSA:1.10.10.603.2E-27116162IPR009057Homeodomain-like
PROSITE profilePS5129419.98161211IPR017930Myb domain
SMARTSM007172.7E-15161209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21163210IPR009057Homeodomain-like
CDDcd001678.24E-11164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLEMDKELKD LQFGSPNHRD LLHLCLSSPN CNSDTCFLES SPATEKIKSQ ISSKNGIWTE  60
EEDNLLIEIV KMHDGSIWKS IGGCAAYFPG RTDIECFHRW QKVSNHDLVK RSWTKEEDEA  120
LIELVRKYGF KRWSFIAKSM PGRIGKQCRE RWHNNLDPVI KKGAWTEEEE SILAHYYQIY  180
GSKWSEIARV LPGRSDNAIK NHWNSSMKKK SSASPTRCDM DVSTSSFCSS LIKPAHDSVK  240
AEDQSLIGMV SPKQSNWLNQ NADNFPTRMA IQNASVEEFW SDINIFGVAT RRASEKSERR  300
SVNLPNLMET AISCKDHANL TFADKHMNSS MDMLATNMDC FPSSSTVTYE AYNSPKWQKA  360
SFSESKFIAG NESDSSYSNY LKLANHEKKV QVGMESNNKS DMSPESVLRN LAMTYENIPS  420
IIRKRSSKKA CAAKYGKSKT PSGMVNSTPE AGCVIGFDNL KLNQGFVPFL HRNAME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-59582109158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-59582109158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g010650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263910.0CU326391.2 Medicago truncatula chromosome 5 clone mth2-182c4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611131.10.0transcription factor MYB3R-3
RefseqXP_024641046.10.0transcription factor MYB3R-3
TrEMBLG7KDF40.0G7KDF4_MEDTR; Myb transcription factor
STRINGAES940890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-66myb domain protein 3r-5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]