PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g009620.1
Common NameMTR_5g009620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 310aa    MW: 34288.9 Da    PI: 4.6383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g009620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-20110160155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp     r  r++lg+f taeeAa  +++a+ kl+g
  Medtr5g009620.1 110 KKYRGVRQRP-WGKWAAEIRDPA----RgVRVWLGTFQTAEEAAIVYDNAAIKLRG 160
                      59********.**********82....36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.37E-34110167No hitNo description
PROSITE profilePS5103223.63111168IPR001471AP2/ERF domain
PfamPF008473.3E-12111160IPR001471AP2/ERF domain
SMARTSM003802.1E-38111174IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-22111167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-30111167IPR001471AP2/ERF domain
PRINTSPR003677.0E-11112123IPR001471AP2/ERF domain
PRINTSPR003677.0E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTTKKNTHLL NLTKENTPKQ PFPKIVRITV TDNDATDCSS DEEESYTTHF LDRNRGIKFV  60
DEIIIEPCTV SKNNNTISNG NGNGVVSRKR NRNRTTGGRK TRAPVSIPAK KYRGVRQRPW  120
GKWAAEIRDP ARGVRVWLGT FQTAEEAAIV YDNAAIKLRG PDALTNFITP PVSAAATCQL  180
SSPPPENEIP LSSLPLPANS GEESQSQNNN NKSLFSPTSV LQCCSSSEEV AESESMFSIP  240
SDIQFDFQDS SQANDAFYNF NGFSESMLYG DIGFEYFDFG LESLQTHKDE DFFQDIDDLF  300
ASDTTVLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-24110167159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793RKRNRNR
28893KRNRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.176010.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g009620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621240.0CR962124.2 Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611024.10.0ethylene-responsive transcription factor CRF2
TrEMBLG7KAN60.0G7KAN6_MEDTR; Ethylene response factor
STRINGAES939820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-40cytokinin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]