PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g009410.1
Common NameMTR_5g009410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 321aa    MW: 35655.1 Da    PI: 8.4518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g009410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-18116166256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Medtr5g009410.1 116 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 166
                      59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-15115175No hitNo description
Gene3DG3DSA:3.30.730.108.0E-31116174IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22116173IPR016177DNA-binding domain
PROSITE profilePS5103223.235116173IPR001471AP2/ERF domain
SMARTSM003803.3E-35116179IPR001471AP2/ERF domain
PRINTSPR003675.4E-10117128IPR001471AP2/ERF domain
PfamPF008471.3E-12117166IPR001471AP2/ERF domain
PRINTSPR003675.4E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDGIQNRDIG SCLSNLILSS STNTLDSIFS DIPSTNTTTD STTFLGCSNF EPLGSSVYLR  60
QRDILQKFYE ESRLNGSFVP SSFSNQSLLT PSLYTTNSTS ISSSFTSLVN PCKKKLYRGV  120
RQRHWGKWVA EIRLPQNRMR VWLGTYETAE AAAYAYDRAA YKLRGEYARL NFPNLKDPTK  180
LGFGDSTRLN ALKNSVDAKI QAICQKVKRE KAKKIAAKKM KKNSGSNNHD TKSDKNSDKI  240
INSSSCSSSS SSLPLSPLVF CDDWVNELFS PTVSEDGIWK GENSPNSVST MVTEETEFED  300
CSLARMPSFD PELIWEVLAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22113173263ATERF1
3gcc_A6e-22113173263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.136810.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g009410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337710.0CT033771.1 Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611004.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W29e-67ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLG7KAL60.0G7KAL6_MEDTR; AP2 domain class transcription factor
STRINGAES939620.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-46ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]