PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g008790.1 | ||||||||
Common Name | MTR_5g008790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18322.4 Da PI: 4.6421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 16 | 65 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++kGVr++k +g+Wv+eIr+p g + r +lg++ t+e Aa a++ a +l+ Medtr5g008790.1 16 KKFKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYATPEAAAVAHDVAFYCLK 65 59*****998.**********8...3.35*******************9988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.46E-26 | 16 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-25 | 17 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.008 | 17 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-25 | 17 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 17 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-17 | 17 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-8 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MNWSTSTTST SDDSNKKFKG VRRRKWGKWV SEIRVPGTQE RLWLGTYATP EAAAVAHDVA 60 FYCLKRPSTL DKLNFPDILS SYCIQQRDNL MSPRSVQKVA SDVAMDVDAR NIASQATTLP 120 EMNHMDNVVP DDVFWWDGLG DDQGVSCSQQ QEDLNISIED YL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | KGVRRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g008790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU469552 | 0.0 | CU469552.2 Medicago truncatula chromosome 5 clone mth2-190a9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610945.1 | 1e-119 | ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | G7K978 | 1e-117 | G7K978_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES93903 | 1e-118 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 7e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g008790.1 |
Entrez Gene | 11437172 |
Publications ? help Back to Top | |||
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