PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g008590.1
Common NameMTR_5g008590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 188aa    MW: 20896.3 Da    PI: 5.6127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g008590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-181059255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +k +g+Wv+eIr+p   g ++r++lg+f t+e+Aa+a++ a++ ++g
  Medtr5g008590.1 10 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 59
                     69****999.**********8...325***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-22968IPR016177DNA-binding domain
SMARTSM003805.4E-381073IPR001471AP2/ERF domain
PROSITE profilePS5103223.6831067IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-321068IPR001471AP2/ERF domain
PfamPF008477.3E-121059IPR001471AP2/ERF domain
PRINTSPR003673.8E-101122IPR001471AP2/ERF domain
CDDcd000181.53E-231169No hitNo description
PRINTSPR003673.8E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSSSGAASSA YRGVRKRKWG KWVSEIREPG TKTRIWLGSF ETPEMAAAAY DVAALHFRGR  60
EARLNFPELA NTLPRPLSNN ADHIRMAAHE AALRLRANTN MLAPLDNNSG TGCSASSTDA  120
VAPLRVRLSP SQIQAINDSP MDSPPTWMQM SHPFMMDDQN MLYGNGYEFE ENEWEDIQQH  180
SDSLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16672168ATERF1
3gcc_A4e-16672168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g008590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4695530.0CU469553.2 Medicago truncatula chromosome 5 clone mth2-57m18, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610926.11e-138ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-62ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLG7K7X91e-137G7K7X9_MEDTR; Ethylene response factor
STRINGAES938841e-137(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-63ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]