PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g008550.1 | ||||||||
Common Name | MTR_5g008550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21818.3 Da PI: 4.8001 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.5 | 2.2e-15 | 20 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y GVr +k +g++v+eIr+p gk+ r++lg++ +++Aa+a++ a+ l+g+ Medtr5g008550.1 20 SYIGVRKRK-WGKFVSEIREP---GKKSRIWLGSYEEPQMAAAAYDIAAFHLKGH 70 699***999.**********8...557***********************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-27 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-28 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.02 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-19 | 20 | 78 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-9 | 20 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.54E-16 | 21 | 78 | No hit | No description |
PRINTS | PR00367 | 3.0E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 59 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MEESNNMQEQ EHANVTPPTS YIGVRKRKWG KFVSEIREPG KKSRIWLGSY EEPQMAAAAY 60 DIAAFHLKGH AAKLNFPDMI EKLPMPASSK AEDIRVAAQQ GALQFKRRPS SSSSEGGVNS 120 INISDSNSNN DSVVPARVGL SPSQIQAINE APLDSPKMWM QMFGFQFDEY RNYDNNVLEL 180 SEWEEIQYES LWD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 21 | 77 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-15 | 21 | 77 | 6 | 63 | ATERF1 |
3gcc_A | 1e-15 | 21 | 77 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g008550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU326394 | 0.0 | CU326394.2 Medicago truncatula chromosome 5 clone mth2-12h14, COMPLETE SEQUENCE. | |||
GenBank | CU469553 | 0.0 | CU469553.2 Medicago truncatula chromosome 5 clone mth2-57m18, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610923.1 | 1e-142 | ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | G7K7X6 | 1e-140 | G7K7X6_MEDTR; Ethylene response factor | ||||
STRING | AES93881 | 1e-141 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-47 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g008550.1 |
Entrez Gene | 11432187 |
Publications ? help Back to Top | |||
---|---|---|---|
|